uniprot

require(GCModeller); #' The Universal Protein Resource (UniProt) imports "uniprot" from "seqtoolkit";

The Universal Protein Resource (UniProt)

.NET clr type export
uniprot_kb: entry	Describes a UniProtKB entry. (因为entry.accessions可能会出现多个值，所以会需要使用 entry.ShadowCopy函数来解决实体多态的问题。经过shadow copy之后可以使用主键@`P:SMRUCC.genomics.Assembly.Uniprot.XML.entry.accession`来创建字典)

.NET clr function exports
as.data.frame.entry	entry: Describes a UniProtKB entry. (因为entry.accessions可能会出现多个值，所以会需要使用 entry.ShadowCopy函数来解决实体多态的问题。经过shadow copy之后可以使用主键@`P:SMRUCC.genomics.Assembly.Uniprot.XML.entry.accession`来创建字典)
open.uniprot	open a uniprot database file
parseUniProt
read.proteinTable	read uniprot protein export output tsv file
proteinTable	export protein annotation data as data frame.
get_sequence
get_description
get_subcellularlocation	get subcellular location of current protein
get_pathways	get related pathway names of current protein
get_reactions
get_xrefs	get external database reference id set
get_keywords
protein.seqs	populate all protein fasta sequence from the given uniprot database reader
id_unify	id unify mapping
metaboliteSet