| uniprot_kb: entry | Describes a UniProtKB entry. (因为entry.accessions可能会出现多个值，所以会需要使用 entry.ShadowCopy()函数来解决实体多态的问题。 经过shadow copy之后可以使用主键entry.accession来创建字典) |
| as.data.frame.fastaheader | FastaHeader: |
| as.data.frame.entry | entry: Describes a UniProtKB entry. (因为entry.accessions可能会出现多个值，所以会需要使用 entry.ShadowCopy()函数来解决实体多态的问题。 经过shadow copy之后可以使用主键entry.accession来创建字典) |
| as.data.frame.domainmodel | DomainModel: The simple protein domain motif model. |
| open.uniprot | open a uniprot database file |
| parseUniProt | parse the uniprot xml document text data as the protein entry object collection |
| parseHeader | Parse the uniprot fasta header text |
| read.proteinTable | read uniprot protein export output tsv file |
| proteinTable | export protein annotation data as data frame. |
| get_domain | get the protein domain region annotation data from the given uniprot protein entry object |
| get_sequence | extract the protein sequence data from the given uniprot protein entry object |
| get_description | get the protein full name and function description text from the given uniprot protein entry object |
| get_subcellularlocation | get subcellular location of current protein |
| get_pathways | get related pathway names of current protein |
| get_reactions | get the catalytic activity reaction data of the given uniprot protein entry object |
| get_xrefs | get external database reference id set |
| get_keywords | get keyword dataframe about the given protein data |
| protein.seqs | populate all protein fasta sequence from the given uniprot database reader |
| id_unify | id unify mapping |
| metaboliteSet | build the metabolite set collection from the catalytic activity reaction data of the given uniprot protein entries |