{uniprot} R# Documentation

uniprot


require(GCModeller);

#' The Universal Protein Resource (UniProt)
imports "uniprot" from "seqtoolkit";

The Universal Protein Resource (UniProt)

.NET clr type export
uniprot_kb: entry

Describes a UniProtKB entry. (因为entry.accessions可能会出现多个值,所以会需要使用 entry.ShadowCopy函数来解决实体多态的问题。 经过shadow copy之后可以使用主键@P:SMRUCC.genomics.Assembly.Uniprot.XML.entry.accession来创建字典)



.NET clr function exports
open.uniprot

open a uniprot database file

parseUniProt
proteinTable

export protein annotation data as data frame.

get_sequence
get_description
get_subcellularlocation

get subcellular location of current protein

get_pathways

get related pathway names of current protein

get_reactions
get_xrefs

get external database reference id set

protein.seqs

populate all protein fasta sequence from the given uniprot database reader

id_unify

id unify mapping

metaboliteSet

[Document Index]