protein.seqs {uniprot} R Documentation

populate all protein fasta sequence from the given uniprot database reader

Description

Usage

protein.seqs(uniprot,
    extractAll = FALSE,
    title = " ");

Arguments

uniprot

a collection of the uniprot protein @T:SMRUCC.genomics.Assembly.Uniprot.XML.entry

extractAll

[as boolean]

title

the fasta title header template, data keys for template could be:

  1. uniprot_id

  2. fullname

  3. name

  4. ncbi_taxid

  5. organism

  6. ec_number

  7. go_id

  8. gene_name

  9. ORF

  10. subcellular_location

  11. db_xrefs...

    12. . [as string]

env

[as Environment]

Details

Authors

seqtoolkit

Value

a collection of the FastaSeq that export from the given protein set.

the generated fasta sequence header title in format: uniprot_id|db_xref|protein function. the db_xref is optional if the parameter "db_xref" is not be omited.

clr value class

Examples

[Package uniprot version 1.0.0.0 Index]