protein.seqs {uniprot} R Documentation

populate all protein fasta sequence from the given uniprot database reader

Description

Usage

protein.seqs(uniprot,
    extractAll = FALSE,
    title = " ");

Arguments

uniprot

a collection of the uniprot protein entry data.

extractAll

populate the sequence with all uniprot accession id. [as boolean]

title

the fasta title header template, data keys for template could be:

  1. uniprot_id
  2. fullname
  3. name
  4. ncbi_taxid
  5. organism
  6. ec_number
  7. go_id
  8. gene_name
  9. ORF
  10. subcellular_location
  11. db_xrefs...
    12. . [as string]

env

the R# runtime environment object. [as Environment]

Details

Authors

seqtoolkit

Value

a collection of the FastaSeq that export from the given protein set.

the generated fasta sequence header title in format: uniprot_id|db_xref|protein function. the db_xref is optional if the parameter "db_xref" is not be omited.

clr value class

Examples

[Package uniprot version 1.0.0.0 Index]