protein.seqs {uniprot} R Documentation

populate all protein fasta sequence from the given uniprot database reader

Description

Usage

protein.seqs(uniprot,
    extractAll = FALSE,
    KOseq = FALSE,
    db.xref = NULL);

Arguments

uniprot

a collection of the uniprot protein entry data.

extractAll

populate the sequence with all uniprot accession id. [as boolean]

env

[as Environment]

Details

Authors

seqtoolkit

Value

a collection of the FastaSeq that export from the given protein set. the generated fasta sequence header title in format: uniprot_id|db_xref|protein function. the dbxref is optional if the parameter `dbxref` is not be omited.

clr value class

Examples

[Package uniprot version 1.0.0.0 Index]