open.uniprot {uniprot} R Documentation

open a uniprot database file

Description

Usage

open.uniprot(files,
    isUniParc = FALSE,
    ignoreError = TRUE,
    tqdm = TRUE);

Arguments

files

a character vector of the uniprot xml format database document file paths for load the protein entries.

isUniParc

the target uniprot database document is the UniParc database?. [as boolean]

ignoreError

ignore the parse error message of the invalid uniprot xml entry data?. [as boolean]

tqdm

show the progress bar of the entries parsing progress?. [as boolean]

env

the R# runtime environment object. [as Environment]

Details

Authors

seqtoolkit

Value

this function returns a pipeline stream of the uniprot protein entries.

clr value class

Examples


[Package uniprot version 1.0.0.0 Index]