bioseq.patterns

require(GCModeller); #' Tools for sequence patterns imports "bioseq.patterns" from "seqtoolkit";

Tools for sequence patterns

.NET clr function exports
open.seedFile
pull.all_seeds
gibbs_scan
view.sites
read.motifs	read sequence motif json file.
read.scans
as.seq_graph
motif.find_sites	Find target loci site based on the given motif model
palindrome.mirror	Search mirror palindrome sites for a given seed sequence
seeds	Create seeds
motifString
create.seeds
find_motifs	find possible motifs of the given sequence collection
plot.seqLogo	Drawing the sequence logo just simply modelling this motif site from the clustal multiple sequence alignment.
scaffold.orthogonality	analyses orthogonality of two DNA-Origami scaffold strands. Multiple criteria For orthogonality Of the two sequences can be specified to determine the level of orthogonality.