| open.seedFile | |
| pull.all_seeds | |
| gibbs_scan | |
| view.sites | |
| read.motifs | read sequence motif json file. |
| read.scans | |
| as.seq_graph | |
| motif.find_sites | Find target loci site based on the given motif model |
| palindrome.mirror | Search mirror palindrome sites for a given seed sequence |
| seeds | Create seeds |
| motifString | |
| create.seeds | |
| find_motifs | find possible motifs of the given sequence collection |
| plot.seqLogo | Drawing the sequence logo just simply modelling this motif site from the clustal multiple sequence alignment. |
| scaffold.orthogonality | analyses orthogonality of two DNA-Origami scaffold strands. Multiple criteria For orthogonality Of the two sequences can be specified to determine the level of orthogonality. |