{bioseq.patterns} R# Documentation

bioseq.patterns


require(GCModeller);

#' Tools for sequence patterns
imports "bioseq.patterns" from "seqtoolkit";

Tools for sequence patterns



.NET clr function exports
open.seedFile
pull.all_seeds
gibbs_scan
view.sites
read.motifs

read sequence motif json file.

read.scans
as.seq_graph
motif.find_sites

Find target loci site based on the given motif model

palindrome.mirror

Search mirror palindrome sites for a given seed sequence

seeds

Create seeds

motifString
create.seeds
find_motifs

find possible motifs of the given sequence collection

Drawing the sequence logo just simply modelling this motif site from the clustal multiple sequence alignment.

scaffold.orthogonality

analyses orthogonality of two DNA-Origami scaffold strands. Multiple criteria For orthogonality Of the two sequences can be specified to determine the level of orthogonality.


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