make the sequence graph embedding data of the given sequence collection

as.seq_graph {bioseq.patterns}

R Documentation

make the sequence graph embedding data of the given sequence collection

Description

Usage

as.seq_graph(fasta,
    mol.type = DNA,
    parallel = FALSE);

Arguments

fasta

a fasta sequence collection for make the sequence graph embedding, which can be a FastaFile object, a collection of the FastaSeq object, or a character vector of the raw sequence data.

mol.type

the molecule type of the input sequence data for select the graph embedding algorithm. [as SeqTypes]

parallel

run the graph embedding task in parallel on multiple cpu cores?. [as boolean]

env

the R# runtime environment object. [as Environment]

Authors

seqtoolkit

Value

the sequence graph embedding vector data is generates from different method based on the mol_type data:

SeqTypes.DNA: Builder.DNAGraph()
SeqTypes.Protein: Builder.PolypeptideGraph()
SeqTypes.RNA: Builder.RNAGraph()

clr value class

SequenceGraph

[Package bioseq.patterns version 1.0.0.0 Index]