as.seq_graph {bioseq.patterns} R Documentation

Description

Usage

as.seq_graph(fasta,
    mol.type = DNA,
    parallel = FALSE);

Arguments

fasta

-

mol.type

[as SeqTypes]

parallel

[as boolean]

env

[as Environment]

Details

Authors

seqtoolkit

Value

the sequence graph embedding vector data is generates from different method based on the `mol_type` data: + SeqTypes.DNA: @M:SMRUCC.genomics.Model.MotifGraph.Builder.DNAGraph(SMRUCC.genomics.SequenceModel.FASTA.FastaSeq) + SeqTypes.Protein: @M:SMRUCC.genomics.Model.MotifGraph.Builder.PolypeptideGraph(SMRUCC.genomics.SequenceModel.FASTA.FastaSeq) + SeqTypes.RNA: @M:SMRUCC.genomics.Model.MotifGraph.Builder.RNAGraph(SMRUCC.genomics.SequenceModel.FASTA.FastaSeq)

clr value class

Examples

[Package bioseq.patterns version 1.0.0.0 Index]