Description

Usage

as.seq_graph(fasta,
    mol.type = DNA,
    parallel = FALSE);

Arguments

Details

Authors

Value

the sequence graph embedding vector data is generates from different method based on the mol_type data:

• SeqTypes.DNA: @M:SMRUCC.genomics.Model.MotifGraph.Builder.DNAGraph(SMRUCC.genomics.SequenceModel.FASTA.FastaSeq)

• SeqTypes.Protein: @M:SMRUCC.genomics.Model.MotifGraph.Builder.PolypeptideGraph(SMRUCC.genomics.SequenceModel.FASTA.FastaSeq)

• SeqTypes.RNA: @M:SMRUCC.genomics.Model.MotifGraph.Builder.RNAGraph(SMRUCC.genomics.SequenceModel.FASTA.FastaSeq)

clr value class

• SequenceGraph

Examples