motif.find_sites {bioseq.patterns} R Documentation

Find target loci site based on the given motif model

Description

Usage

motif.find_sites(motif, target,
    cutoff = 0.6,
    minW = 8,
    identities = 0.85,
    parallel = FALSE);

Arguments

motif

[as SequenceMotif]

target

a collection of fasta sequence

cutoff#

-

minW#

-

Details

Authors

seqtoolkit

Value

this function returns data object of type MotifMatch.

clr value class

Examples

[Package bioseq.patterns version 1.0.0.0 Index]