motif.find_sites {bioseq.patterns} R Documentation

Find target loci site based on the given motif model

Description

Usage

motif.find_sites(motif, target,
    cutoff = 0.6,
    minW = 8,
    identities = 0.85,
    pvalue = 0.05,
    parallel = FALSE,
    motif.name = NULL);

Arguments

motif

could be SequenceMotif or @T:SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.Motif.MSAMotif

target

cutoff#

minW#

Details

Authors

seqtoolkit

Value

this function returns data object of type MotifMatch.

clr value class

Examples

[Package bioseq.patterns version 1.0.0.0 Index]