{GenBank} R# Documentation

GenBank


require(GCModeller);

#' NCBI genbank assembly file I/O toolkit
imports "GenBank" from "seqtoolkit";

NCBI genbank assembly file I/O toolkit



.NET clr function exports
read.genbank

read the given genbank assembly file.

accession_id
is.plasmid
populate.genbank

populate a list of genbank data objects from a given list of files or stream.

write.genbank

save the modified genbank file

as.genbank

converts tabular data file to genbank assembly object

feature

create new feature site

add.feature
enumerateFeatures

enumerate all features in the given NCBI genbank database object

featureKeys

get all feature key names

featureMeta

extract the feature metadata from a genbank clr feature object

addMeta
origin.fasta

get, add or replace the genome origin fasta sequence in the given genbank assembly file.

getRNA.fasta

get all of the RNA gene its gene sequence in fasta sequence format.

protein.fasta

get or set fasta sequence of all CDS feature in the given genbank assembly file.

add.RNA.gene

[Document Index]