origin.fasta {GenBank} R Documentation

get, add or replace the genome origin fasta sequence in the given genbank assembly file.

Description

Usage

origin.fasta(gb,
    nt = NULL,
    mol.type = "genomic DNA");

Arguments

gb

[as File]

nt

[as FastaSeq]

mol.type

[as string]

Details

Authors

seqtoolkit

Value

if the **`nt`** parameter is nothing, means get fasta sequence, otherwise is add/update fasta sequence in the genbank assembly, the returns type of the api will change from the getted fasta sequence to the modified genbank assembly object.

clr value class

Examples

[Package GenBank version 1.0.0.0 Index]