populate a list of genbank data objects from a given list of files or stream.

load_genbanks {GenBank}

R Documentation

populate a list of genbank data objects from a given list of files or stream.

Description

Usage

load_genbanks(files,
    extract.genomics = FALSE,
    autoClose = TRUE);

Arguments

files

a list of files or file stream

extract.genomics

only returns the genomics chromosome data? set this parameter value to TRUE will filter out the plasmid, mitochondrion, plastid type sequence data. set this parameter value to TRUE if use this data source for pan-genome analysis. [as boolean]

autoClose

auto close of the Stream if the files contains stream object?. [as boolean]

env

the R# runtime environment object. [as Environment]

Details

this function supports of read assembly data directly from *.gz genbank archive file.

Authors

seqtoolkit

Value

a lazy pipeline collection of the File ncbi genbank assembly object;

this function returns a R# error message object if the given file list is nothing.

clr value class

File

[Package GenBank version 1.0.0.0 Index]