analysis {pangenome} R Documentation

run pan-genome analysis

Description

Usage

analysis(pangenome, orthologSet);

Arguments

pangenome

context data for run pan-genome analysis. [as GenomeAnalyzer]

orthologSet

gene ortholog data table, usually be the bi-direction best hit of the blast result. [as list]

env

[as Environment]

Details

Authors

comparative_toolkit

Value

this function returns data object of type PanGenomeResult.

clr value class

Examples

[Package pangenome version 1.0.0.0 Index]