PanGenomeResult {SMRUCC.genomics.Analysis.PanGenome}

.NET clr documentation

PanGenomeResult

Description

分析结果存储结构（修改为支持多基因组）

Declare

            
# namespace SMRUCC.genomics.Analysis.PanGenome
export class PanGenomeResult {
   CloudGeneFamilies: string;
   # 

   # 
共线性区块
   # 
   CollinearBlocks: CollinearBlock[];
   # 核心基因家族（所有品种都有）
   CoreGeneFamilies: string;
   # 附属基因家族（部分品种有，但不是全部）
   DispensableGeneFamilies: string;
   # Key为基因家族ID，Value为该家族包含的所有基因ID列表
   GeneFamilies: list;
   GeneticDistanceMatrix: list;
   # 

   # 
泛基因组曲线数据
   # 
   # 
   # 
   # 列表项为：加入的第N个基因组，总基因数，核心基因数
   PangenomeCurveData: PangenomeCurveData[];
   # 

   # 
PAV 矩阵
   # 
   # 
   # 
   # Key为基因家族ID，Value为字典(Key为基因组名，Value为拷贝数/存在与否)
   PAVMatrix: list;
   ShellGeneFamilies: string;
   # 单拷贝直系同源基因家族（每个品种仅1个拷贝）
   SingleCopyOrthologFamilies: string;
   SoftCoreGeneFamilies: string;
   # 特异性基因家族（仅1个品种有）
   SpecificGeneFamilies: string;
   # 结构变异列表
   StructuralVariations: StructuralVariation[];
   # 统计数据（修改为字典，Key为基因组名称，Value为该基因组基因总数）
   TotalGenesInGenomes: list;
}

        

.NET clr type reference tree

1. use by property member CollinearBlocks: CollinearBlock
2. use by property member GeneFamilies: list
3. use by property member GeneticDistanceMatrix: list
4. use by property member PangenomeCurveData: PangenomeCurveData
5. use by property member PAVMatrix: list
6. use by property member StructuralVariations: StructuralVariation
7. use by property member TotalGenesInGenomes: list

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