PanGenomeResult {SMRUCC.genomics.Analysis.PanGenome}

.NET clr documentation

PanGenomeResult

Description

分析结果存储结构（修改为支持多基因组）

Declare

            
# namespace SMRUCC.genomics.Analysis.PanGenome
export class PanGenomeResult {
   # 基因家族分布比例统计（按基因数与按家族个数两种口径）
   CategoryPercent: CategoryPercentDataset;
   CloudGeneFamilies: string;
   # 

   # 
共线性区块
   # 
   CollinearBlocks: CollinearBlock[];
   # 核心基因家族（所有品种都有）
   CoreGeneFamilies: string;
   # 附属基因家族（部分品种有，但不是全部）
   DispensableGeneFamilies: string;
   # Key为基因家族ID，Value为该家族包含的所有基因ID列表
   GeneFamilies: list;
   GeneticDistanceMatrix: list;
   # 基因组存在/缺失均衡度的香农信息熵散点数据
   GenomeEntropyData: GenomeEntropyDataset;
   # 基因组基本信息统计（基因总数/特有基因数/核心基因占比）
   GenomeStats: GenomeStatRow[];
   # 

   # 
泛基因组曲线数据
   # 
   # 
   # 
   # 列表项为：加入的第N个基因组，总基因数，核心基因数
   PangenomeCurveData: PangenomeCurveData[];
   # 

   # 
PAV 矩阵
   # 
   # 
   # 
   # Key为基因家族ID，Value为字典(Key为基因组名，Value为拷贝数/存在与否)
   PAVMatrix: list;
   # PAV矩阵的PCA降维散点数据
   PCAData: PCAScatterDataset;
   ShellGeneFamilies: string;
   # 单拷贝直系同源基因家族（每个品种仅1个拷贝）
   SingleCopyOrthologFamilies: string;
   SoftCoreGeneFamilies: string;
   # 特异性基因家族（仅1个品种有）
   SpecificGeneFamilies: string;
   # 结构变异列表
   StructuralVariations: StructuralVariation[];
   # SV结构变异的信息熵散点图与KMeans聚类结果
   SVEntropy: SVDomainEntropyDataset;
   # 统计数据（修改为字典，Key为基因组名称，Value为该基因组基因总数）
   TotalGenesInGenomes: list;
}

        

.NET clr type reference tree

1. use by property member CategoryPercent: CategoryPercentDataset
2. use by property member CollinearBlocks: CollinearBlock
3. use by property member GeneFamilies: list
4. use by property member GeneticDistanceMatrix: list
5. use by property member GenomeEntropyData: GenomeEntropyDataset
6. use by property member GenomeStats: GenomeStatRow
7. use by property member PangenomeCurveData: PangenomeCurveData
8. use by property member PAVMatrix: list
9. use by property member PCAData: PCAScatterDataset
10. use by property member StructuralVariations: StructuralVariation
11. use by property member SVEntropy: SVDomainEntropyDataset
12. use by property member TotalGenesInGenomes: list

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