pangenome

require(GCModeller); #' pan-genome analysis toolkit imports "pangenome" from "comparative_toolkit";

pan-genome analysis toolkit

.NET clr type export
pangenome: PanGenomeResult	分析结果存储结构（修改为支持多基因组）
ortho_groups: UnionFind	并查集辅助类，用于高效处理基因家族的聚类

.NET clr function exports
as.data.frame.svtable	SVTable:
as.data.frame.pavtable	PAVTable:
build_context	Load the pangenome analysis context
analysis	run pan-genome analysis
set_ortho_group	set orthology group for make gene family
source_id	set species name to the genome gff3 context model
report_html	generates the html report text for the pan-genome analysis result
sv_table	export structure variant result table
pav_table