build_context {pangenome} R Documentation

Load the pangenome analysis context

Description

Usage

build_context(genomes,
    soft.core.threshold = 0.95,
    uniqueByAcc = FALSE,
    genome.size = NULL,
    sv.cluster.count = 4);

Arguments

genomes

should be a collection of the genome GFF3 feature tables

soft.core.threshold

threshold value for identify the gene as soft core, thres value 1 means core genes. [as double]

env

[as Environment]

Details

Authors

comparative_toolkit

Value

this function returns data object of type GenomeAnalyzer.

clr value class

Examples

[Package pangenome version 1.0.0.0 Index]