genomics_context

require(GCModeller); #' the tools for processing of the genomics context information imports "genomics_context" from "seqtoolkit";

the tools for processing of the genomics context information

.NET clr function exports
as.data.frame.primercoverage	PrimerCoverage:
genomics_context	build the genomics context model object from a given gff3 annotation table
primer_coverage	evaluate the primer hit coverage of the candidate primer regions on the given chromosome context
set_context	set genomics context of the matched motif site
filter_strand	filter genes by given strand direction
location	create a new nucleotide location object
is.forward	assert that does the given nucleotide location is in forward direction?
offset	do offset of the given location
context	Create a new context model of a specific genomics feature site.
relationship	get the segment relationship of two location
context_location	make the chromosome mapping of the blastn hits result data
TSS_upstream	get TSS upstream site sequence data