Create a new context model of a specific genomics feature site.

context {genomics_context}

R Documentation

Create a new context model of a specific genomics feature site.

Description

Usage

context(loci, distance,
    note = NULL);

Arguments

loci

the location of the target genomics feature site, which can be a gene model object(IGeneBrief), a contig object(Contig), or a NucleotideLocation nucleotide location object.

distance

the distance value in nucleotide for the context model build. [as integer]

note

the note text of the generated context model. If this parameter is not specified, then the text of the given loci object will be used. [as string]

env

the R# runtime environment object. [as Environment]

Authors

seqtoolkit

Value

a Context genomics feature site context model object;

this function returns a R# error message object if the given location data can not be cast to a nucleotide location object.

clr value class

Context

[Package genomics_context version 1.0.0.0 Index]