bioseq.fasta

require(GCModeller); #' Fasta sequence toolkit imports "bioseq.fasta" from "seqtoolkit";

Fasta sequence toolkit

.NET clr type export
MSA_result: MSAOutput

.NET clr function exports
as.data.frame.fastafile	FastaFile: A FASTA file that contains multiple sequence data. (一个包含有多条序列数据的FASTA文件)
as.data.frame.fastaseq	FastaSeq: The FASTA format file of a bimolecular sequence.(Notice that this file is only contains on sequence.)
size	get the sequence length
chars	get alphabets represents of the fasta sequence
mass	evaluate the molecule mass of the given sequence
seq_formula
seq_sgt	Create algorithm for make sequence embedding
seq_vector	embedding the given fasta sequence as vector
read.seq	Read a single fasta sequence file
read.fasta	read a fasta sequence collection file
open.fasta	open the fasta sequence file
parse.fasta	parse the fasta sequence object from the given text data
write.fasta	write a fasta sequence or a collection of fasta sequence object
translate	Do translation of the nt sequence to protein sequence
MSA.of	Do multiple sequence alignment
as.fasta	Create a fasta sequence collection object from any given sequence collection.
fasta	Create a new fasta sequence objects
fasta.headers	get/set the fasta headers title
fasta.titles	get the fasta titles from a collection of fasta sequence
cut_seq.linear	cut part of the sequence