MSA_result: MSAOutput |
as.data.frame.fastafile | FastaFile: A FASTA file that contains multiple sequence data. (一个包含有多条序列数据的FASTA文件) |
as.data.frame.fastaseq | FastaSeq: The FASTA format file of a bimolecular sequence.(Notice that this file is only contains on sequence.) |
size | get the sequence length |
chars | get alphabets represents of the fasta sequence |
mass | evaluate the molecule mass of the given sequence |
seq_formula | |
read.seq | Read a single fasta sequence file |
read.fasta | read a fasta sequence collection file |
open.fasta | open the fasta sequence file |
parse.fasta | parse the fasta sequence object from the given text data |
write.fasta | write a fasta sequence or a collection of fasta sequence object |
translate | Do translation of the nt sequence to protein sequence |
MSA.of | Do multiple sequence alignment |
as.fasta | Create a fasta sequence collection object from any given sequence collection. |
fasta | Create a new fasta sequence objects |
fasta.headers | get/set the fasta headers title |
fasta.titles | get the fasta titles from a collection of fasta sequence |
cut_seq.linear | cut part of the sequence |