Create a fasta sequence collection object from any given sequence collection.

as.fasta {bioseq.fasta}

R Documentation

as.fasta(x);

any type of sequence collection, which can be:

a FastaFile object or a collection of the FastaSeq object;
a multiple sequence alignment result(MSAOutput);
a set of the SimpleSegment sequence segment object;
a sequence motif object(SequenceMotif);
a ncbi genbank feature object(Feature) for extract the nucleotide sequence data of the target feature site;
a fastq sequence collection or a character vector of the raw sequence data.

env

the R# runtime environment object. [as Environment]

seqtoolkit

a FastaFile sequence collection object that created from the given sequence data source;

this function returns a R# error message object if the input data source can not be cast to a fasta sequence collection.

[Package bioseq.fasta version 1.0.0.0 Index]