FastaSeq {SMRUCC.genomics.SequenceModel.FASTA} .NET clr documentation

FastaSeq

Description

The FASTA format file of a bimolecular sequence.(Notice that this file is only contains on sequence.)

FASTA格式的生物分子序列文件。(但是请注意:文件中只包含一条序列的情况,假若需要自定义所生成的FASTA文件的标题的格式, 请复写FastaSeq.ToString方法)

Declare

            
# namespace SMRUCC.genomics.SequenceModel.FASTA
export class FastaSeq extends ISequenceModel {
   # Does this sequence contains some gaps?(这条序列之中是否包含有空格?)
   HaveGaps: boolean;
   # The attribute header of this FASTA file. The fasta header usually have some format which can be parsed by some 
   #  specific loader and gets some well organized information about the sequence. The format of the header is 
   #  usually different between each biological database.
   Headers: string;
   IsProtSource: boolean;
   # Get the sequence length of this Fasta object.
   Length: integer;
   # split the first token of the headers inside title as the unique reference id of current sequence object.
   locus_tag: string;
   # The sequence data that contains in this FASTA file.
   SequenceData: string;
   # The first character ">" is not included in the title string data.
   Title: string;
}

        

.NET clr type reference tree

  1. this class extends from ISequenceModel class: ISequenceModel

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