| as.data.frame.blastnmapping | BlastnMapping: Blastn Mapping for fastaq |
| as.data.frame.hitrecord | HitRecord: 在目标基因组之上的blast hit的结果 |
| blast_tabular | cast the blastn tabular format hits result as a data frame object |
| read.blast | Open the blast output text file for parse data result. |
| blastn.maphit | export results of fastq reads mapping to genome sequence. |
| blasthit.sbh | Export single side besthit |
| blasthit.bbh | export the bi-directional best hit(BBH) result from the given forward and reverse best hit data streams |
| remove_protein_suffix | removes protein suffix id |
| grep.names | apply a text grep script on the query name or hit name of the blast query result data |
| stream.flush | Save the annotation rawdata into the given stream file. |
| besthit_filter | make filter of the blast best hits via the given parameter combinations |
| filter_low_level | filter the bi-directional best hit data by removing the low level hits(SBH and NA level) |
| read.besthits | read the hits data in pipeline stream style |
| read.bbh_hits | read the bi-directional best hit data in pipeline stream style |
| read.outfmt6 | read ncbi blast output format 6 (tabular) file for blastn result mapping to genome sequence |
| open.stream | Open result table stream writer |
| read_m8 | read the diamond m8 annotation table file output |
| diamond_hitgroups | Make query group and convert to alignment hit collection |