get, add or replace the genome origin fasta sequence in the given genbank assembly file.

origin_fasta {GenBank}

R Documentation

get, add or replace the genome origin fasta sequence in the given genbank assembly file.

Description

Usage

origin_fasta(gb,
    nt = NULL,
    mol.type = "genomic DNA");

Arguments

the File ncbi genbank assembly object for get, add or replace its genome origin sequence data. [as File]

the fasta sequence object for update the genome origin sequence data. [as FastaSeq]

mol.type

the molecule type of the genome origin sequence, default value is genomic DNA. [as string]

Authors

seqtoolkit

Value

if the **nt** parameter is nothing, means get fasta sequence, otherwise is add/update fasta sequence in the genbank assembly, the returns type of the api will change from the getted fasta sequence to the modified genbank assembly object.

clr value class

File
FastaSeq

[Package GenBank version 1.0.0.0 Index]