compounds.origin {microbiome} R Documentation

create compound origin profile dataset

Description

Usage

compounds.origin(annotations, tree,
    rank = Family,
    ranges = NULL);

Arguments

annotations

a list of multiple organism protein functional annotation dataset. [as list]

tree

the ncbi taxonomy tree. [as NcbiTaxonomyTree]

rank

minimal rank for takes the most abondance taxonomy from the raw dataset. [as TaxonomyRanks]

ranges

[as string]

env

[as Environment]

Details

Authors

metagenomics_kit

Value

this function returns data object of type list.

clr value class

Examples

[Package microbiome version 1.0.0.0 Index]