{microbiome} R# Documentation

microbiome

require(GCModeller);

#' tools for metagenomics and microbiome
imports "microbiome" from "metagenomics_kit";

tools for metagenomics and microbiome

.NET clr type export
PICRUSt: MetaBinaryReader


.NET clr function exports
parse.otu_taxonomy

parse the otu taxonomy data file
save.PICRUSt_matrix
read.PICRUSt_matrix
predict_metagenomes

creates the final metagenome functional predictions. It multiplies each normalized OTU abundance by each predicted functional trait abundance to produce a table of functions (rows) by samples (columns).
diff.entropy

evaluate the similarity of two taxonomy data vector
compounds.origin.profile
compounds.origin

create compound origin profile dataset
taxonomy.rank_table
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