microbiome

require(GCModeller); #' tools for metagenomics and microbiome imports "microbiome" from "metagenomics_kit";

tools for metagenomics and microbiome

.NET clr type export
PICRUSt: MetaBinaryReader

.NET clr function exports
as.data.frame.ranklevelview	RankLevelView: samples data aggregate in a specific taxonomy rank
as.data.frame.otudata`1	OTUData`1:
parse.otu_taxonomy	parse the otu taxonomy data file
build.PICRUSt_db	build PICRUSt binary database file
read_PICRUSt	read the compiled PICRUSt binary database file
predict_metagenomes	creates the final metagenome functional predictions. It multiplies each normalized OTU abundance by each predicted functional trait abundance to produce a table of functions (rows) by samples (columns).
diff.entropy	evaluate the similarity of two taxonomy data vector
compounds.origin.profile
compound_origins	create compound origin profile dataset
taxonomy.rank_table	Generate a serials of the otu table in different rank level
make_vfdb_model	make vfdb gsea background model for run enrichment analysis