Create the gsea background model for metabolism analysis

metpa {background}

R Documentation

metpa(kegg, reactions,
    org.name = NULL,
    is.ko.ref = FALSE,
    multipleOmics = FALSE);

kegg

the kegg Pathway model collection of current organism or the KEGG Map data collection. andalso could be a tuple list of the idset.

reactions

A collection of the reference ReactionTable model data for build the metabolism network

org.name

the KEGG organism code (or the organism name) of the target model, default NULL. [as string]

is.ko.ref

treats the given KEGG pathway model as the KO reference model? Default FALSE means the pathway model of a specific organism. [as boolean]

multipleOmics

creates the background model for the multiple omics data analysis? Default FALSE. [as boolean]

env

the R# runtime environment. [as Environment]

gseakit

a metpa background model for the metabolism enrichment analysis.

[Package background version 1.0.0.0 Index]