seq_vector {bioseq.fasta} R Documentation

embedding the given fasta sequence as vector

Description

Usage

seq_vector(sgt, seqs);

Arguments

sgt

[as CreateMatrix]

seqs

-

env

[as Environment]

Details

Authors

seqtoolkit

Value

this function returns data object of type any kind.

clr value class

Examples

 imports "bioseq.fasta" from "seqtoolkit";
 
 # get fasta sequence data
 let seqs = read.fasta("./proteins.fa");
 let sgt = seq_sgt(moltype = "prot");
 let vec = sgt |> seq_vector(seqs);
 
 # run data analysis on the generated embedding vectors
[Package bioseq.fasta version 1.0.0.0 Index]