make the cluster tree of the given sequence fingerprint data

make_clusterTree {bioseq.fasta}

R Documentation

make the cluster tree of the given sequence fingerprint data

Description

Usage

make_clusterTree(fingerprints);

Arguments

fingerprints

a collection of the NTCluster sequence fingerprint data, which can be the output of the read.fingerprint_bson api, or a pipeline object that produces a set of the @T:SMRUCC.genomics.Model.OperonMapper.NTCluster

env

[as Environment]




        Details

        the cluster tree is built based on the fingerprint similarity: the fingerprint data will be clustered into the same cluster when the similarity between them is greater than or equals to 0.8, and the fingerprints that their similarity is greater than 0.6 will be treated as the neighbours of each other.

        
Authors

        seqtoolkit

        Value

        a vector of the NTCluster fingerprint data that the cluster property of the fingerprint object has been assigned with the cluster id of the corresponding cluster: the fingerprints are grouped by the cluster id, and the clusters are sorted by the cluster size in descending order;

this function returns a R# error message object if the input data can not be cast to a collection of the NTCluster fingerprint data.
clr value class
NTCluster

        Examples

        

        
        [Package bioseq.fasta version 1.0.0.0 Index]