align.needleman_wunsch {bioseq.blast} R Documentation

do the global pairwise sequence alignment via the needleman-wunsch

Description

algorithm

Usage

align.needleman_wunsch(query, ref);

Arguments

query

a FastaSeq sequence object of the query sequence. [as FastaSeq]

ref

a FastaSeq sequence object of the reference subject sequence. [as FastaSeq]

Details

Authors

seqtoolkit

Value

a factor value that contains the global alignment result: the score value is the global alignment score, and the value data is a vector of the aligned sequence fragment object.

clr value class

Examples

[Package bioseq.blast version 1.0.0.0 Index]