besthit_filter {annotation.workflow} R Documentation

make filter of the blast best hits via the given parameter combinations

Description

Usage

besthit_filter(besthits,
    evalue = NULL,
    identities = NULL,
    delNohits = TRUE,
    pickTop = FALSE);

Arguments

besthits

is a collection of the blastp/blastn parsed result: BestHit. [as pipeline]

evalue

new cutoff value of the evalue for make filter of the given hits collection. [as double]

delNohits

removes HITS_NOT_FOUND? default is yes. [as boolean]

pickTop

pick the top one hit for each query group?. [as boolean]

env

[as Environment]

Details

Authors

seqtoolkit

Value

this function returns data object of type pipeline.

clr value class

Examples

[Package annotation.workflow version 1.0.0.0 Index]