assign_terms {annotation.terms} R Documentation

assign the top term by score ranking

Description

Usage

assign_terms(alignment,
    term.maps = NULL,
    top.best = TRUE,
    direct.term.maps = FALSE,
    filter.unknown = FALSE,
    identities.cut = 0);

Arguments

alignment

the ncbi localblast alignment result, it can be the BestHit array or the @T:SMRUCC.genomics.Interops.NCBI.Extensions.DiamondAnnotation

term.maps

[as list]

env

[as Environment]

Details

Authors

seqtoolkit

Value

this function returns data object of type RankTerm.

clr value class

Examples

[Package annotation.terms version 1.0.0.0 Index]