annotation.terms

require(GCModeller); #' tools for make ontology term annotation based on the proteins sequence data imports "annotation.terms" from "seqtoolkit";

tools for make ontology term annotation based on the proteins sequence data

.NET clr type export
genome_vector: GenomeVector	基因组代谢酶注释结果

.NET clr function exports
as.data.frame.rankterm	RankTerm:
as.data.frame.koassignmentcandidate	KOAssignmentCandidate: 用于存储一个查询基因的KO分配候选
as.data.frame.bidirectionalbesthit	BiDirectionalBesthit: Best hit result from the binary direction blastp result. Ortholog mapping result.
as.data.frame.myvacog	MyvaCOG: Protein cog category using myva database.
removes_proteinIDSuffix	Removes the numeric suffix (usually representing an exon index) from protein identifiers.
read_rankterms	read the given table file as rank term object
rank_term
geneNames	try parse gene names from the product description strings
assign_ko	do KO number assign based on the bbh alignment result.
assign.COG
assign_terms	assign the top term by score ranking
m8_metabolic_terms
term_table
assign.Pfam
assign.GO
write.id_maps
read.MyvaCOG
read.id_maps
synonym
read_vfdb_seqs	read VFDB fasta sequence database
write_simple_vfdb
make_vectors
write_genomes_jsonl
tfidf_vectorizer	make embedding of the genomics metabolic model