cast taxonomy object to biom style taxonomy string

Description

Usage

biom.string(taxonomy,
    trim.genusName = FALSE);

Arguments

Details

Authors

Value

generates a taxonomy string in format liked: "kBacteria; pFirmicutes; cClostridia; oClostridiales; fLachnospiraceae; gRobinsoniella; s__peoriensis"

clr value class

• string

Examples

 # parse the string as taxonomy object
 let tax = biom_string.parse(["k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Robinsoniella; s__peoriensis"]);
 # then convert back the taxonomy object as the string content
 print(biom.string(tax));