{taxonomy_kit} R# Documentation

taxonomy_kit


require(GCModeller);

{$desc_comments}
imports "taxonomy_kit" from "metagenomics_kit";

.NET clr type export
taxonomy: Taxonomy

A simple organism taxonomy model.

taxonomy_node: TaxonomyNode

The tree node calculation model for NcbiTaxonomyTree, a labeled tree node for a specific ncbi taxid.



.NET clr function exports
biom.string
biom_string.parse
taxonomy_name
unique_taxonomy
Ncbi.taxonomy_tree
ranks
taxonomy_ranks
taxonomy.filter
lineage
as.taxonomy.tree
consensus
read.mothurTree
taxonomy_range
LCA
accession2Taxid

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