{repository} R# Documentation

repository


require(GCModeller);

#' The kegg data model repository tool
imports "repository" from "kegg_kit";

The kegg data model repository tool

.NET clr type export
kegg_pathway: Pathway

The kegg pathway annotation data.(这个代谢途径模型是针对某一个物种而言的)

kegg_reaction: Reaction

KEGG reaction annotation data.

kegg_compound: Compound

A data model for the KEGG compound.

kegg_map: Map

The kegg reference map



.NET clr function exports
enzyme_description

Get the class description category data for EC number

write.msgpack

a generic method for write kegg data stream as messagepack

index
load.compounds

load repository of kegg @T:SMRUCC.genomics.Assembly.KEGG.DBGET.bGetObject.Compound.

load.reactions

load kegg reaction data repository

load reaction data from the given kegg reaction data repository.

load.maps

load list of kegg reference @T:SMRUCC.genomics.Assembly.KEGG.WebServices.XML.Map.

load.pathways

load kegg pathway maps from a given repository data directory.

reactions.table

load kegg reaction table from a given repository model or resource file on your filesystem.

reactionsId
compoundsId

get a vector of kegg compound id from the kegg reaction_class/pathway maps data repository

reaction_class.repo

load stream of the reaction_class data model from kegg data repository.

reaction_class.table

load reaction class data from a repository data source.

fetch.kegg_organism

Fetch the kegg organism table data from a given resource

save.KEGG_pathway

save the kegg pathway annotation result data.

read.KEGG_pathway

read the kegg pathway annotation result data.

save.kegg_organism

save the kegg organism data as data table file.

read.kegg_organism
compound

construct a new kegg compound data model

pathway
reaction
reaction_class

create a new data model of kegg reaction_class

shapeAreas

create shape area data for kegg graph rendering

keggMap

[Document Index]