repository


        require(GCModeller);
                               

#' The kegg data model repository tool
imports "repository" from "kegg_kit";

.NET clr type export
kegg_pathway: Pathway	The kegg pathway annotation data.
kegg_reaction: Reaction	KEGG reaction annotation data.
kegg_compound: Compound	A data model for the KEGG compound.
kegg_map: Map	The kegg reference map

.NET clr function exports
writeBin.compoundrepository	CompoundRepository:
writeBin.maprepository	MapRepository: The repository xml data of kegg Map
writeBin.reactionrepository	ReactionRepository: KEGG的参考代谢反应模型库，封装了对Reaction的对象查询操作
writeBin.compound	Compound: A data model for the KEGG compound.
writeBin.map	Map: The kegg reference map
writeBin.reaction	Reaction: KEGG reaction annotation data.
enzyme_description	Get the class description category data for EC number
write.msgpack	a generic method for write kegg data stream as messagepack
index
load.compounds	load repository of kegg Compound.
load.reactions	load kegg reaction data repository load reaction data from the given kegg reaction data repository.
load.maps	load list of kegg reference Map.
load.pathways	load kegg pathway maps from a given repository data directory.
reactions.table	load kegg reaction table from a given repository model or resource file on your filesystem.
reactionsId
compoundsId	get a vector of kegg compound id from the kegg reaction_class/pathway maps data repository
reaction_class.repo	load stream of the reaction_class data model from kegg data repository.
reaction_class.table	load reaction class data from a repository data source.
fetch.kegg_organism	Fetch the kegg organism table data from a given resource
save.KEGG_pathway	save the kegg pathway annotation result data.
read.KEGG_pathway	read the kegg pathway annotation result data.
save.kegg_organism	save the kegg organism data as data table file.
read.kegg_organism
read.kgml
compound	construct a new kegg compound data model
pathway
reaction
reaction_class	create a new data model of kegg reaction_class
shapeAreas	create shape area data for kegg graph rendering
keggMap

repository

load kegg reaction data repository