repository


        require(GCModeller);
                               

#' The kegg data model repository tool
imports "repository" from "kegg_kit";

.NET clr type export
kegg_pathway: Pathway	The kegg pathway annotation data.(这个代谢途径模型是针对某一个物种而言的)
kegg_reaction: Reaction	KEGG reaction annotation data.
kegg_compound: Compound	A data model for the KEGG compound.
kegg_map: Map	The kegg reference map

.NET clr function exports
writeBin.compoundrepository	CompoundRepository:
writeBin.maprepository	MapRepository: The repository xml data of kegg Map
writeBin.reactionrepository	ReactionRepository: KEGG的参考代谢反应模型库，封装了对Reaction的对象查询操作
writeBin.compound	Compound: A data model for the KEGG compound.
writeBin.map	Map: The kegg reference map
writeBin.reaction	Reaction: KEGG reaction annotation data.
enzyme_description	Get the class description category data for EC number
write.msgpack	a generic method for write kegg data stream as messagepack
index
load.compounds	load repository of kegg @`T:SMRUCC.genomics.Assembly.KEGG.DBGET.bGetObject.Compound`.
load.reactions	load kegg reaction data repository load reaction data from the given kegg reaction data repository.
load.maps	load list of kegg reference @`T:SMRUCC.genomics.Assembly.KEGG.WebServices.XML.Map`.
load.pathways	load kegg pathway maps from a given repository data directory.
reactions.table	load kegg reaction table from a given repository model or resource file on your filesystem.
reactionsId
compoundsId	get a vector of kegg compound id from the kegg reaction_class/pathway maps data repository
reaction_class.repo	load stream of the reaction_class data model from kegg data repository.
reaction_class.table	load reaction class data from a repository data source.
fetch.kegg_organism	Fetch the kegg organism table data from a given resource
save.KEGG_pathway	save the kegg pathway annotation result data.
read.KEGG_pathway	read the kegg pathway annotation result data.
save.kegg_organism	save the kegg organism data as data table file.
read.kegg_organism
compound	construct a new kegg compound data model
pathway
reaction
reaction_class	create a new data model of kegg reaction_class
shapeAreas	create shape area data for kegg graph rendering
keggMap

repository

load kegg reaction data repository