kegg_reconstruction {metabolism} R Documentation

do kegg pathway reconstruction by given protein annotation data

Description

Usage

kegg_reconstruction(reference, reactions, annotations,
    min.cov = 0.3,
    prefix = NULL);

Arguments

reference

reactions

annotations

the @T:SMRUCC.genomics.Annotation.Ptf.ProteinAnnotation

min.cov

[as double]

env

[as Environment]

Details

Authors

kegg_kit

Value

A set of the kegg pathway object that contains with the KEGG id mapping(protein id mapping and assigned compound id list)

clr value class

Examples

[Package metabolism version 1.0.0.0 Index]