gsea_cluster {background} R Documentation

Create a cluster for gsea background

Description

Usage

gsea_cluster(x, clusterId, clusterName,
    desc = "n/a",
    id = "xref",
    name = "name");

Arguments

x

id, name data fields should be exists in current dataframe object, other data fields will be used as the gene member terms. [as dataframe]

clusterId

id of the cluster. [as string]

clusterName

display name of the cluster model. [as string]

desc

the description of the cluster model. [as string]

id

the field column name for get gene members id. [as string]

name

the field column name for get gene members name. [as string]

Details

the input dataframe could be a set of database xrefs, example as:

xrefnamealiasKEGGuniprot
| | | | | |

Authors

gseakit

Value

this function returns data object of type Cluster.

clr value class

Examples

[Package background version 1.0.0.0 Index]