create gsea background from a given obo ontology file data.

dag.background {background}

R Documentation

create gsea background from a given obo ontology file data.

Description

Usage

dag.background(dag,
    flat = FALSE,
    verbose.progress = TRUE);

Arguments

dag

[as GO_OBO]

flat

Flat the ontology tree into cluster via the is_a relationship?

default false, required of the enrichment.go function for run enrichment analysis value true, will flat the ontology tree into cluster, then the enrichment analysis could be applied via the enrichment. [as boolean]




        Details

        

        Authors

        gseakit

        Value

        this function returns data object of type Background.clr value class
Background

        Examples

        

        
        [Package background version 1.0.0.0 Index]