dag.background {background} R Documentation

create gsea background from a given obo ontology file data.

Description

Usage

dag.background(dag,
    flat = FALSE,
    verbose.progress = TRUE);

Arguments

dag

[as GO_OBO]

flat

Flat the ontology tree into cluster via the is_a relationship? default false, required of the enrichment.go function for run enrichment analysis value true, will flat the ontology tree into cluster, then the enrichment analysis could be applied via the enrichment function. [as boolean]

Details

Authors

gseakit

Value

this function returns data object of type Background.

clr value class

Examples

[Package background version 1.0.0.0 Index]