cluster_filter {background} R Documentation

make filter of the background model

Description

Usage

cluster_filter(background, id.removes);

Arguments

background

[as Background]

geneSet

min.size

max.intersects

Details

Authors

gseakit

Value

a new background model that has cluster filtered by the given rule.

clr value class

Examples

 let kb = read.background("hsa.xml");
 let idset = c("id1","id2","id3");
 let filter_kb = kb |> geneSet.filter(idset, min.size=5, max.intersects=500);
 
 print(background_summary(filter_kb));

[Package background version 1.0.0.0 Index]