as.background(clusters,
background.size = -1,
name = "n/a",
tax.id = "n/a",
desc = "n/a",
is.multipleOmics = FALSE,
filter.compoundId = TRUE,
kegg.code = NULL);
clusters
a data cluster or a collection of kegg pathway model
background.size
default value -1 or zero means auto evaluated. [as integer]
name
the background model name. [as string]
tax.id
ncbi taxonomy id of the target organism. [as string]
desc
the model description. [as string]
is.multipleOmics
Create a enrichment background model for run multiple omics data analysis?
this parameter is only works for the kegg pathway model where you are
speicifc via the `clusters` parameter. [as boolean]
filter.compoundId
do compound id filtering when target model is `is_multipleOmics`?
(all of the KEGG drug id and KEGG glycan id will be removed from the cluster model). [as boolean]
kegg.code
the kegg organism code when the given `clusters` collection is
a collection of the pathway object. [as string]
env
[as Environment]
.