KO.background {background} R Documentation

create kegg background model

Description

Usage

KO.background(genes, maps,
    size = -1,
    genomeName = "unknown",
    id.map = NULL,
    multiple.omics = FALSE,
    term.db = "unknown",
    instance.map = NULL);

Arguments

genes

a set of molecules with the kegg orthology/compound id mapping

maps

the kegg maps model

size

the background gene size, default -1 or zero means auto calculation. [as integer]

genomeName

the genome name that tagged with this background model. [as string]

Details

Authors

gseakit

Value

this function returns data object of type Background.

clr value class

Examples

[Package background version 1.0.0.0 Index]