genome.signature_profile {sigma_difference} R Documentation

The ``rho*`` genome signature profile: the double-strand symmetrized

Description

dinucleotide relative abundance rho*XY = fXY / (fX fY) of all 16<br /> dinucleotides, each reported with its six-level significance symbol<br /> (--- / -- / - / + / ++ / +++, thresholds 0.50 / 0.70 /<br /> 0.78 / 1.23 / 1.30 / 1.50).

Usage

genome.signature_profile(nt);

Arguments

nt

the genome nucleotide sequence. [as FastaSeq]

Details

Authors

comparative_toolkit

Value

the {XY, rho* [symbol]} profile table

clr value class

Examples

[Package sigma_difference version 1.0.0.0 Index]