OverwritesColors {SMRUCC.genomics.Visualize.Circos.Configurations.ComponentModel}

.NET clr documentation

OverwritesColors

Description

Use @P:SMRUCC.genomics.Visualize.Circos.Configurations.Circos.chromosomes_color```` to change the color Of the ideograms. This approach works well When the only thing you want To Do Is change the color Of the segments.

Another way To achieve this Is To actually redefine the colors which are used To color the ideograms. The benefit Of doing this Is that whenever you refer To the color (which you can use by Using the name Of the chromosome), you Get the custom value.

If you Then look In the human karyotype file linked To above, you'll see that Each chromosome's color is chrN where N is the number of the chromosome. Thus, hs1 has color chr1, hs2 has color chr2, And so On. For convenience, a color can be referenced Using 'chr' and 'hs' prefixes (chr1 And hs1 are the same color).

Colors are redefined by overwriting color definitions, which are found In the <colors> block. This block Is included below from the colors_fonts_patterns.conf file, which contains all the Default definitions. To overwrite colors, use a "*" suffix And provide a New value, which can be a lookup To another color.

Declare

            
# namespace SMRUCC.genomics.Visualize.Circos.Configurations.ComponentModel
export class OverwritesColors extends CircosDistributed {
   colors: list;
   filePath: string;
   includes: iterates(CircosConfig);
   main: Circos;
   MimeType: ContentType[];
   refPath: string;
   section: string;
}

        

.NET clr type reference tree

1. this class extends from CircosDistributed class: CircosDistributed
2. use by property member colors: list
3. use by property member includes: iterates(CircosConfig)
4. use by property member main: Circos
5. use by property member MimeType: ContentType

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