SimilarDiscriptions {SMRUCC.genomics.Analysis.SequenceTools.DNA_Comparative.DeltaSimilarity1998}

.NET clr documentation

SimilarDiscriptions

Description

For convenience, we describe levels of sigma-differences for some reference examples (all values mutliplied by 1000)

Declare

            
# namespace SMRUCC.genomics.Analysis.SequenceTools.DNA_Comparative.DeltaSimilarity1998
export class SimilarDiscriptions extends Enum {
   # (sigma <= 50; pervasively within species, human vs cow, Lactococcus lactis vs Streptococcus pyogenes).
   [@desc "sigma <= 50; pervasively within species, human vs cow, Lactococcus lactis vs Streptococcus pyogenes"]
   Close: SimilarDiscriptions = 0;

   # (55 <= sigma <= 85; human vs chicken, Escherichia coli vs Haemophilus influenzae, Synechococcus vs Anabaena).
   [@desc "sigma = [55, 85]; human vs chicken, Escherichia coli vs Haemophilus influenzae, Synechococcus vs Anabaena"]
   ModeratelySimilar: SimilarDiscriptions = 1;

   # (90 <= sigma <= 120; human vs sea urchin, M. genitalium vs M. pneumoniae).
   [@desc "sigma = [90, 120]; human vs sea urchin, M. genitalium vs M. pneumoniae"]
   WeaklySimilar: SimilarDiscriptions = 2;

   # (125 <= sigma <= 145; human vs Sulfolobus, E. coli vs R. prowazekii, M. jannaschii vs M. thermoautotrophicum).
   [@desc "sigma = [125, 145]; human vs Sulfolobus, E. coli vs R. prowazekii, M. jannaschii vs M. thermoautotrophicum"]
   DistantlySimilar: SimilarDiscriptions = 3;

   # (150 <= sigma <= 180; human vs Drosophilia, E. coli vs Helicobacter pylori).
   [@desc "sigma = [150, 180]; human vs Drosophilia, E. coli vs Helicobacter pylori"]
   Distant: SimilarDiscriptions = 4;

   # (sigma >= 190; human vs E. coli, E. coli vs Sulfolobus, M. jannaschii vs Halobacterium).
   [@desc "sigma >= 190; human vs E. coli, E. coli vs Sulfolobus, M. jannaschii vs Halobacterium"]
   VeryDistant: SimilarDiscriptions = 5;

}

        

.NET clr type reference tree

1. this class extends from Enum class: Enum
2. use by field member Close: SimilarDiscriptions
3. use by field member ModeratelySimilar: SimilarDiscriptions
4. use by field member WeaklySimilar: SimilarDiscriptions
5. use by field member DistantlySimilar: SimilarDiscriptions
6. use by field member Distant: SimilarDiscriptions
7. use by field member VeryDistant: SimilarDiscriptions

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