AlienGeneClasses {SMRUCC.genomics.Analysis.SequenceTools.DNA_Comparative.DeltaSimilarity1998}

.NET clr documentation

AlienGeneClasses

Description

The decision class of one gene under the 2D threshold rule.

Declare

            
# namespace SMRUCC.genomics.Analysis.SequenceTools.DNA_Comparative.DeltaSimilarity1998
export class AlienGeneClasses extends Enum {
   # normal host gene: B(g|all) below the threshold
   Native: AlienGeneClasses = 0;

   # B(g|all) above the threshold but the codon usage is still close to the ribosomal protein genes: a highly expressed host gene (EF-G/EF-Tu, glycolysis enzymes, DnaK/GroEL, ...)
   HighlyExpressed: AlienGeneClasses = 1;

   # unlike both the average host gene and the ribosomal protein genes: likely a laterally transferred (alien) gene
   Alien: AlienGeneClasses = 2;

}

        

.NET clr type reference tree

1. this class extends from Enum class: Enum
2. use by field member Native: AlienGeneClasses
3. use by field member HighlyExpressed: AlienGeneClasses
4. use by field member Alien: AlienGeneClasses

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