TaxonomyTree {SMRUCC.genomics.Analysis.Metagenome.gast}

.NET clr documentation

TaxonomyTree

Description

a taxonomy tree node

@M:SMRUCC.genomics.Analysis.Metagenome.gast.Taxonomy.consensus(SMRUCC.genomics.Analysis.Metagenome.gast.Taxonomy[],System.Double)对象存在bug，当最低百分比低于50%的时候， 会造成重复的同等级分类出现，使用这个树对象来避免这种情况的发生

Declare

            
# namespace SMRUCC.genomics.Analysis.Metagenome.gast
export class TaxonomyTree extends Taxonomy {
   childs: iterates(TaxonomyTree);
   class: string;
   depth: TaxonomyRanks;
   family: string;
   genus: string;
   # Count of the hits numbers on this node rank
   hits: integer;
   kingdom: string;
   lineage: string;
   lowestLevel: TaxonomyRanks;
   ncbi_taxid: string;
   order: string;
   parent: TaxonomyTree;
   phylum: string;
   # get the tree root
   root: TaxonomyTree;
   scientificName: string;
   species: string;
   strain: string;
}

        

.NET clr type reference tree

1. this class extends from Taxonomy class: Taxonomy
2. use by property member childs: iterates(TaxonomyTree)
3. use by property member depth: TaxonomyRanks
4. use by property member lowestLevel: TaxonomyRanks
5. use by property member parent: TaxonomyTree
6. use by property member root: TaxonomyTree

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