create the psRNATarget algorithm object for predict the miRNA target site

psRNATarget {miRNA}

R Documentation

create the psRNATarget algorithm object for predict the miRNA target site

Description

Usage

psRNATarget(
    version = V2_2017,
    max.expectation = 5);

Arguments

version

the schema version of the psRNATarget algorithm: the V1_2011 schema uses the seed region of the 2-8nt site of the miRNA sequence, and the V2_2017 schema(the default) uses the seed region of the 2-13nt site. [as Schema]

max.expectation

the maximum expectation value cutoff of the target site match: the candidate match result that its position weighted expectation value is greater than this cutoff will be ignored(the expectation value is the lower the better). [as double]

Authors

TRNtoolkit

Value

a psRNATarget algorithm object, which implements the miRNAMapper interface, so that it can be used by the miRNA_targets api for run the target site match.

clr value class

psRNATarget

[Package miRNA version 1.0.0.0 Index]