--- High-confidence intersection (psRNATarget ∩ TargetFinder) ---

intersect_targets {miRNA}

R Documentation

--- High-confidence intersection (psRNATarget ∩ TargetFinder) ---

Description

Usage

intersect_targets(psRNATarget, TargetFinder,
    site.tolerance = 3);

Arguments

psRNATarget

the target site match result of the psRNATarget algorithm, which is a collection of the @T:SMRUCC.genomics.Analysis.SequenceAlignment.siRNAHit.siRNAHit

TargetFinder

the target site match result of the TargetFinder algorithm, which is a collection of the @T:SMRUCC.genomics.Analysis.SequenceAlignment.siRNAHit.siRNAHit

site.tolerance

[as integer]

env

[as Environment]




        Details

        

        Authors

        TRNtoolkit

        Value

        a vector of the siRNAHit high confidence target site data: the match result that is reported by both of the psRNATarget and the TargetFinder algorithm.

the merged site data of each target site: the Source property is marked as Intersection(psRNATarget+TargetFinder), the StartSite/EndSite property is the union range of the two algorithm result, the MismatchCount/WobbleCount/GapCount property is the max value of the two algorithm result, the TranslationInhibition property is TRUE when any of the two algorithm result is a translation inhibition candidate, and the Alignment property contains the expectation value of the psRNATarget and the penalty score of the TargetFinder;

this function returns a R# error message object if the input data can not be cast to a collection of the siRNAHit data.
clr value class
siRNAHit

        Examples

        

        
        [Package miRNA version 1.0.0.0 Index]