create the TargetFinder algorithm object for predict the miRNA target site

TargetFinder {miRNA}

R Documentation

create the TargetFinder algorithm object for predict the miRNA target site

Description

Usage

TargetFinder(
    score.cutoff = 5);

Arguments

score.cutoff

the score cutoff of the target site match: the candidate match result that its position weighted penalty score is greater than this cutoff will be ignored(the penalty score is the lower the better), the recommended value is 4.0 for the strict mode, 5.0 for the standard mode and 7.0 for the loose mode. [as double]

Authors

TRNtoolkit

Value

a TargetFinder algorithm object, which implements the miRNAMapper interface, so that it can be used by the miRNA_targets api for run the target site match.

clr value class

TargetFinder

[Package miRNA version 1.0.0.0 Index]