plot kegg enrichment result in bubble plot

kegg.enrichment.bubbles {visualPlot}

R Documentation

plot kegg enrichment result in bubble plot

Description

Usage

kegg.enrichment.bubbles(profiles,
    size = "3800,2600",
    padding = "padding:300px 1000px 300px 200px;",
    unenrichColor = "LightGray",
    themeColors = "Set1:c8",
    alpha = 0.75,
    displays = 5,
    serialTopn = FALSE,
    bubbleRadius = [40],
    heatmap = FALSE,
    bubbleStyle = FALSE,
    top.samples = 16,
    ppi = 300);

Arguments

profiles

A dataframe object(or a set of the dataframe object in tuple list) that contains the kegg pathway enrichment data, data fields is required for generates the bubble data: + Raw p: pvalue of the enrichment term + Impact: x axis value + Hits: the molecule hits number in current enrichment term + pathway: the kegg pathway id

size

padding

unenrichColor

[as string]

ppi

[as integer]

env

[as Environment]

Authors

visualkit

Value

this function returns data object of type any kind.

clr value class

any kind

[Package visualPlot version 1.0.0.0 Index]