plot the heatmap with kegg class information

class_heatmap {visualPlot}

R Documentation

plot the heatmap with kegg class information

Description

Usage

class_heatmap(x, metadata, sampleinfo,
    size = "10000,6500",
    padding = "padding: 300px 1600px 1200px 300px;",
    label.font = "font-style: normal; font-size: 18; font-family: Bookman Old Style;",
    tick.font = "font-style: normal; font-size: 12; font-family: Bookman Old Style;",
    axisStroke = "stroke: black; stroke-width: 5px; stroke-dash: solid;",
    class.label = "Class",
    dpi = 300);

Arguments

the molecule expression dataframe object, should contains the data of: the row names in the dataframe is the molecule name labels and all the column fields should be the expression value in different samples. [as dataframe]

metadata

the metadata for the molecules of given expression data `x`, should contains the metadata fields of: 1. class: a character vector of the kegg class labels, example as pathway names, module names, or orthology labels 2. logp: a numeric vector of the multiple group ANOVA test pvalue its log transform result of the molecules 3. VIP: a numeric vector of the multiple group pls-da VIP result value for the molecules the data field name is case-sensitive. [as dataframe]

sampleinfo

[as SampleInfo]

size

the image size of the plot

padding

the padding of the plot region

label.font

[as string]

tick.font

[as string]

axisStroke

[as string]

dpi

[as integer]

env

[as Environment]

Authors

visualkit

Value

this function returns data object of type any kind.

clr value class

any kind

[Package visualPlot version 1.0.0.0 Index]