{simulator} R# Documentation

simulator


require(GCModeller);

#' the GCModeller bio-system simulator
imports "simulator" from "vcellkit";

the GCModeller bio-system simulator



.NET clr function exports
as.data.frame.memorydataset MemoryDataSet:
kegg_mass

Create a new status profile data object with unify mass contents.

metacyc_mass
set_status

set the omics data from this function

mass0

get the initial mass value

attach_memorydataset
run
vcell.model

create a generic vcell object model from a loaded vcell xml file model

vcell.mass.index

get mass key reference index collection

vcell.flux.index

get flux key reference index collection

engine.load

create a new virtual cell engine

dynamics.default

Create the default cell dynamics parameters

apply.module_profile
vcell.snapshot

make a snapshot of the mass and flux data


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