{compiler} R# Documentation

compiler


require(GCModeller);

#' The GCModeller virtual cell model creator
imports "compiler" from "vcellkit";

The GCModeller virtual cell model creator



.NET clr function exports
kegg

create kegg repository arguments

geneKO.maps

create a list that map gene id to KO id.

assembling.genome

create genome framework for the virtual cell model

assembling.metabolic

add metabolism network information for the virtual cell model

assembling.TRN

add transcription regulation network information for the virtual cell model

vcell.markup

Save the virtual cell data model in XML file format.

compile_biocyc

Build a specific organism metacyc database as virtual cell model

compile_network

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